So there's a few options here:
If you think about it, it's silly to add currentuser entries before the first login.
Therefore it follows that NTLite delete all those entries if added to the registry portion or before login portion in post-setup.
This will prevent lots of problems for users. All kinds of things will be instantly resolved.
Perhaps a block on those two keys to help keep start menu and search function.
Finally, please only show "Servicing stack compatibility option is disabled, deep removal mode is enabled." if removing components. Not something you want to see if you are just applying a post-setup.